FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index6_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22776199 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5051625 | 2.6021535 | 5.5774283 | 1 |
| CCTGG | 5045995 | 2.5772107 | 6.288512 | 1 |
| CTTCT | 5010850 | 2.5552878 | 5.5816474 | 1 |
| CTGGA | 4718420 | 2.4752138 | 8.744067 | 1 |
| TCCAG | 4629565 | 2.382894 | 6.057695 | 2 |
| CTGCT | 4617660 | 2.3566103 | 5.2474804 | 1 |
| CTCCT | 4660090 | 2.333504 | 7.8781614 | 1 |
| CTGGG | 4390500 | 2.285434 | 8.494837 | 1 |
| CAGGA | 4279935 | 2.264394 | 5.440695 | 1 |
| CTTCA | 4287385 | 2.2050562 | 5.579612 | 1 |
| CTCCA | 4358720 | 2.2012632 | 8.308107 | 1 |
| CCCAG | 4298205 | 2.1723883 | 7.329295 | 1 |
| CAGAA | 3965210 | 2.1141825 | 5.03047 | 1 |
| CTCTG | 4009530 | 2.0462527 | 6.454418 | 1 |
| CTGCA | 3906215 | 2.010577 | 5.0271244 | 1 |
| TGGAA | 3489745 | 1.880281 | 5.093129 | 2 |
| CTGGC | 3649525 | 1.8639727 | 5.2535357 | 1 |
| CTGAA | 3515855 | 1.8586965 | 5.48809 | 1 |
| CTCAG | 3404430 | 1.7523019 | 5.9167128 | 1 |
| CTGGT | 3226285 | 1.6781088 | 5.210987 | 1 |
| CTTGG | 3132885 | 1.629528 | 5.0700345 | 1 |
| CTCCC | 3138465 | 1.5431825 | 5.1805296 | 1 |